Bacteria (and other microorganisms) can adapt to a variety of environments that include external sources such as soil, water, and organic matter or internal milieu as found within insect vectors, animals, and humans, where they normally reside and subsist. In doing so, the bacteria ensure their survival and enhance the possibility of transmission. By producing asymptomatic infection or mild disease rather than death of the host, microorganisms that normally live in people enhance the possibility of transmission from one person to another.

Some bacteria that commonly cause disease in humans exist primarily in animals and incidentally infect humans. For example, Salmonella and Campylobacter species typically infect animals and are transmitted in food products to humans. Other bacteria produce infection of humans that is inadvertent, a mistake in the normal life cycle of the organism; the organisms have not adapted to humans, and the disease they produce may be severe. For example, Y. pestis (plague) has a well-established life cycle in rodents and rodent fleas, and transmission by the fleas to humans is inadvertent; Bacillus anthracis (anthrax) lives in the environment, occasionally infects animals, and is transmitted to humans by products such as raw hair from infected animals. The Clostridium species are ubiquitous in the environment and are transmitted to humans by ingestion (eg, Clostridium perfringens gastroenteritis and Clostridium botulinum [botulism]) or when wounds are contaminated by soil (eg, C perfringens [gas gangrene] and Clostridium tetani [tetanus]). Both B anthracis and the Clostridium species elaborate spores to protect the organisms' nucleic acid from harsh environmental factors such as ultraviolet light, desiccation, chemical detergents, and pH extremes. These spores ensure survival in external environments including foods ingested by humans. After being ingested or inoculated, the spores germinate into the vegetative, metabolically active form of the pathogen.

The clinical manifestations of diseases (eg, diarrhea, cough, genital discharge) produced by microorganisms often promote transmission of the agents. Examples of clinical syndromes and how they enhance transmission of the causative bacteria are as follows: Vibrio cholerae can cause voluminous diarrhea, which may contaminate salt and fresh water; drinking water or seafood such as oysters and crabs may be contaminated; ingestion of contaminated water or seafood can produce infection and disease. Similarly, contamination of food products with sewage containing E coli that causes diarrhea results in transmission of the bacteria. M .tuberculosis (tuberculosis) naturally infects only humans; it produces respiratory disease with cough and production of aerosols, resulting in transmission of the bacteria from one person to another.

Many bacteria are transmitted from one person to another on hands. A person with S. aureus carriage in the anterior nares may rub his nose, pick up the staphylococci on the hands, and spread the bacteria to other parts of the body or to another person, where infection results. Many opportunistic pathogens that cause nosocomial infections are transmitted from one patient to another on the hands of hospital personnel. Handwashing is thus an important component of infection control.

The most frequent portals of entry of pathogenic bacteria into the body are the sites where mucous membranes meet with the skin, which are the respiratory (upper and lower airways), gastrointestinal (primarily mouth), genital, and urinary tracts. Abnormal areas of mucous membranes and skin (eg, cuts, burns, and other injuries) are also frequent sites of entry. Normal skin and mucous membranes provide the primary defense against infection. To cause disease, pathogens must overcome these barriers.