Proteins of the Diet. Dietary proteins are chemically long chains of amino acids bound together by peptide linkages. A typical linkage is the following:

The characteristics of each protein are determined by the types of amino acids in the protein molecule and by the sequential arrangements of these amino acids. The physical and chemical characteristics of different proteins important in human tissues are discussed in Chapter 70.
Digestion of Proteins in the Stomach. Pepsin, an important peptic enzyme of the stomach, is most active at a pH of 2.0 to 3.0 and is inactive at a pH above about 5.0. Consequently, for this enzyme to cause digestion of protein, the stomach juices must be acidic. As explained in Chapter 65, the gastric glands secrete a large quantity of hydrochloric acid. This hydrochloric acid is secreted by the parietal (oxyntic) cells in the glands at a pH of about 0.8, but by the time it is mixed with the stomach contents and with secretions from the non-oxyntic glandular cells of the stomach, the pH then averages around 2.0 to 3.0, a highly favorable range of acidity for pepsin activity.
One of the important features of pepsin digestion is its ability to digest the protein collagen, an albuminoid type of protein that is affected little by other digestive enzymes. Collagen is a major constituent of the intercelular connective tissue of meats; therefore, for the digestive enzymes to penetrate meats and digest the other meat proteins, it is necessary that the collagen fibers be digested. Consequently, in persons who lack pepsin in the stomach juices, the ingested meats are less well penetrated by the other digestive enzymes and, therefore, may be poorly digested.
As shown in Figure 1, pepsin only initiates the process of protein digestion, usually providing only 10 to 20 percent of the total protein digestion to convert the protein to proteoses, peptones, and a few polypeptides. This splitting of proteins occurs as a result of hydrolysis at the peptide linkages between amino acids.

Fig1. Digestion of proteins.
Most Protein Digestion Results From Actions of Pancreatic Proteolytic Enzymes. Most protein digestion occurs in the upper small intestine, in the duodenum and jejunum, under the influence of proteolytic enzymes from pancreatic secretion. Immediately upon entering the small intestine from the stomach, the partial break down products of the protein foods are attacked by the major proteolytic pancreatic enzymes trypsin, chymotrypsin, carboxypolypeptidase, and elastase, as shown in Figure 1.
Both trypsin and chymotrypsin split protein molecules into small polypeptides; carboxypolypeptidase then cleaves individual amino acids from the carboxyl ends of the polypeptides. Proelastase, in turn, is converted into elastase, which then digests elastin fibers that partially hold meats together.
Only a small percentage of the proteins are digested all the way to their constituent amino acids by the pancreatic juices. Most remain as dipeptides and tripeptides.
Digestion of Peptides by Peptidases in the Enterocytes That Line the Small Intestinal Villi. The last digestive stage of the proteins in the intestinal lumen is achieved by the enterocytes that line the villi of the small intestine, mainly in the duodenum and jejunum. These cells have a brush border that consists of hundreds of microvilli projecting from the surface of each cell. In the membrane of each of these microvilli are multiple peptidases that protrude through the membranes to the exterior, where they come in contact with the intestinal fluids.
Two types of peptidase enzymes are especially important, aminopolypeptidase and several dipeptidases. They split the remaining larger polypeptides into tripeptides and dipeptides and a few into amino acids. The amino acids, dipeptides, and tripeptides are easily transported through the microvillar membrane to the interior of the enterocyte.
Finally, inside the cytosol of the enterocyte are multiple other peptidases that are specific for the remaining types of linkages between amino acids. Within minutes, virtu ally all the last dipeptides and tripeptides are digested to the final stage to form single amino acids, which then pass on through to the other side of the enterocyte and thence into the blood.
More than 99 percent of the final protein digestive products that are absorbed are individual amino acids, with only rare absorption of peptides and very rare absorption of whole protein molecules. Even these few absorbed molecules of whole protein can sometimes cause serious allergic or immunologic disturbances, as discussed in Chapter 35.